(#co-first author; *Corresponding author)
1. Yang XY#, Rakha A#, Chen W, Hou J, Qi XB, Shen QK, Dai SS, Sulaiman X, Abdulloevich NT, Afanasevna ME, Ibrohimovich KB, Chen X, Yang WK, Adnan A, Zhao RH, Yao YG, Su B, Peng MS*, Zhang YP*. (2021) Tracing the genetic legacy of the Tibetan Empire in the Balti. Molecular Biology and Evolution 38:1529-1536.
2. Shen QK#, Peng MS#, Adeola AC#, Kui L#, Duan S, Miao YW, Eltayeb NM, Lichoti JK, Otecko NO, Strillacci MG, Gorla E, Bagnato A, Charles OS, Sanke OJ, Dawuda PM, Okeyoyin AO, Musina J, Njoroge P, Agwanda B, Kusza S, Nanaei HA, Pedar R, Xu MM, Du Y, Nneji LM, Murphy RW, Wang MS, Esmailizadeh A*, Dong Y*, Ommeh SC*, Zhang YP*. (2021) Genomic analyses unveil helmeted guinea fowl (Numida meleagris) domestication in West Africa. Genome Biology and Evolution 13:evab090.
3. Wang MS#, Thakur M#, Peng MS#, Jiang Y#, Frantz LAF#, Li M#, Zhang JJ, Wang S, Peters J, Otecko NO, Suwannapoom C, Guo X, Zheng ZQ, Esmailizadeh A, Hirimuthugoda NY, Ashari H, Suladari S, Zein MSA, Kusza S, Sohrabi S, Kharrati-Koopaee H, Shen QK, Zeng L, Yang MM, Wu YJ, Yang XY, Lu XM, Jia XZ, Nie QH, Lamont SJ, Lasagna E, Ceccobelli S, Gunwardana HGTN, Senasige TM, Feng SH, Si JF, Zhang H, Jin JQ, Li ML, Liu YH, Chen HM, Ma C, Dai SS, Bhuiyan AKFH, Khan MS, Silva GLLP, Le TT, Mwai OA, Ibrahim MNM, Supple M, Shapiro B, Hanotte O, Zhang G, Larson G, Han JL*, Wu DD*, Zhang YP*. (2020) 863 genomes reveal the origin and domestication of chicken. Cell Research 30:693-701.
4. Guo X, Li YQ, Wang MS, Wang ZB, Zhang Q, Shao Y, Jiang RS, Wang S, Ma CD, Murphy RW, Wang GQ, Dong J, Zhang L, Wu DD*, Du BW*, Peng MS*, Zhang YP*. (2018) A parallel mechanism underlying frizzle in domestic chickens. Journal of Molecular Cell Biology 10:589-591.
5. Wang MS#, Otecko NO#, Wang S#, Wu DD#, Yang MM, Xu YL, Murphy RW, Peng MS*, Zhang YP*. (2017) An evolutionary genomic perspective on the breeding of dwarf chickens. Molecular Biology and Evolution 34:3081-3088.
6. Shen QK#, Sulaiman X#, Yao YG, Peng MS*, Zhang YP*. (2016) Was ADH1B under selection in European populations? American Journal of Human Genetics 99:1217-1219.
7. Peng MS, Wu F, Murphy RW, Yang XJ, Zhang YP*. (2016) An ancient record of an avian hybrid and the potential uses of art in ecology and conservation. Ibis. 158:444-445.
8. Peng MS, Shi NN, Yao YG, Zhang YP*. (2015) Caveats about interpretation of ancient chicken mtDNAs from northern China. Proceedings of the National Academy of Sciences of the United States of America 112: E1970-E1971.
9. Shi NN#, Fan L#, Yao YG, Peng MS*, Zhang YP*. (2014) Mitochondrial genomes of domestic animals need scrutiny. Molecular Ecology 23:5393–5397.
10. Miao YW#, Peng MS#, Wu GS, Ouyang YN, Yang ZY, Yu N, Liang JP, Pianchou G, Beja-Pereira A, Mitra B, Palanichamy MG, Baig M, Chaudhuri TK, Shen YY, Kong QP, Murphy RW, Yao YG, Zhang YP*. (2013) Chicken domestication: an updated perspective based on mitochondrial genomes. Heredity 110:277-282.
11. Peng MS, Palanichamy MG, Yao YG, Mitra B, Cheng YT, Zhao M, Liu J, Wang HW, Pan H, Wang WZ, Zhang AM, Zhang W, Wang D, Zou Y, Yang Y, Chaudhuri TK, Kong QP*, Zhang YP*. (2011) Inland post-glacial dispersal in East Asia revealed by mitochondrial haplogroup M9a'b. BMC Biology 9:2.
12. Peng MS#, Quang HH#, Dang KP, Trieu AV, Wang HW, Yao YG, Kong QP*, Zhang YP*. (2010) Tracing the Austronesian footprint in Mainland Southeast Asia: a perspective from mitochondrial DNA. Molecular Biology and Evolution 27:2417-2430.