遗传资源与进化国家重点实验室
张亚平研究组
施鹏研究组
文建凡研究组
黄京飞研究组
宿 兵研究组
王 文研究组
毛炳宇研究组
杨君兴研究组
蒋学龙研究组
俞维理研究组
郑 萍研究组
马占山研究组
孔庆鹏研究组
杨晓君研究组
车 静研究组
焦保卫研究组
吴东东研究组
盛能印研究组
 
 
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研究队伍 — 两栖爬行类多样性与进化研究组
学科带头人: 车 静

  首批入选“中国科学院青年创新促进会优秀会员”。2011年获中科院“卢嘉锡青年人才奖”,2014年获中科院“朱李月华优秀教师奖”。获“云南省中青年学术和技术带头人后备人才”称号。主持国家自然科学基金重大项目课题、优秀青年基金,国家科技部基础性工作专项课题,中科院重点部署及知识创新重要方向项目等多个国家及部门科研计划。

  研究组成立于2012年9月。长期活跃在中国和东南亚这一重要区域,以两栖爬行动物为研究对象,致力于生物多样性的形成、演化、物种适应及保护工作。目前已在Syst Biol、PNAS、Mol Ecol 等一系列专业杂志发表文章50多篇,其中SCI论文37篇。

  学习和工作经历: 

  1996.09-2000.06  学士,西南师范大学 

  2000.09-2003.06  硕士,西南师范大学 

  2003.09-2006.12  博士,四川大学  

  2006.12-2008.09  助理研究员,中科院昆明动物研究所 

  2008.10-2012.10  副研究员,中科院昆明动物研究所  

  2008.11-2009.04  访问学者,美国加州大学伯克利分校整合生物学系 

  2011.10-2011.12  高级访问学者,美国德克萨斯大学奥斯汀分校整合生物学系 

  2015.01-2015.03  高级访问学者,美国加州大学伯克利分校整合生物学系

  2012.10-至今     研究员,中科院昆明动物研究所 

    研究方向:

1.隐存物种多样性发掘和系统分类学 

  由于全球气候变化、疾病传播以及未知原因的影响,近年来全球两栖类种群面临急剧下降,而另一方面,每年新的物种不断的被描述,确切反映了以前调查和分类工作的不完全。很多物种可能还未来得及识别就已经灭绝。 

  研究组利用DNA条形码技术,结合形态、生态等多方面数据探讨隐存物种多样性问题,提升我们对中国以及东南亚整体两爬生物区系多样性的系统认识。同时,在进化的框架下,重点完善我国及东南亚两爬物种中重要类群的分类系统,利用多基因或基因组信息,解决长期有争议的物种系统演化关系。 

2.物种形成与分化及生物多样性格局的演变 

  两栖爬行动物具有对环境依赖性强,迁移能力弱等特点,因此其系统发育和群体结构相比于其它动物类群更能反映地质事件和气候变化的影响。本课题组致力于开展多物种类群的比较研究,通过宏、微观结合,研究普遍的成种机制和模式,揭示多样性分布格局形成的重要规律和历史环境因素,为生物多样性可持续保护提供科学指导。 

3.适应性进化研究 

  高通量测序技术的发展为我们研究变温动物一系列特殊的表型适应及其进化机制带来了契机。通过转录组和全基因组水平的研究,以系统的野外观察工作为基础,结合生态、行为、生理、基因等多方面的综合,探讨两爬代表物种表型多样性的演变与环境适应的关系,进而探讨适应的遗传机制。 


    现承担科研项目:

   1. 国家自然科学基金优秀青年项目,2017.1-2019.12 

  2. 中国科学院青促会优秀会员项目,2016.1-2018.1 

  3. 泰国中、北部两栖类多样性及代表物种的分子资源挖掘,中国科学院东南亚生物多样性研究中心第一期(2015)区域性国际合作基金项目,2015.11-2017.10 

  4. 高山倭蛙适应高原极端环境的遗传机制研究,国家自然科学基金重大研究计划,2015.1-2017.12 

  5. 青藏高原两栖类适应性状的解析,中国科学院战略性先导科技专项(B)(课题主持)2014.7-2019.6; 

  6. 青藏高原动物物种形成与分化,中国科学院重点部署项目(课题主持),2013.1-2015.12,已结题; 

  7. 哺乳类及两栖类重要类群DNA条形码,国家科技基础性工作专项(课题主持),2011.6-2016.5,已结题; 

  8. 部分两栖爬行类物种DNA条形码及其揭示的隐存生物多样性、系统进化探究,国家自然科学基金重大项目(课题主持),2011.1-2014.12,已结题; 


    近期论文及成果:

  (*corresponding author; # equal first author) 

  2016 

  1. Yuan ZY#, Zhow WW#, Chen X#, Poyarkov JRNA, Chen HM, Jang-Liaw NH, Chou WH, Matzke NJ, Iizuka K, Min MS, Kuzmin SL, Zhang YP*, Cannatella DC*, Hillis DM*, Che J* 2016 Spatiotemporal diversification of the true frogs (Genus Rana): A historical framework for a widely studied group of model organisms. Systematic Biology, doi: 10.1093/sysbio/syw055. 

  2. Guo P*, Liu Q, Chu F, Zhong GH, Chen X, Myers EA, Che J, Zhang L, Ziegler T, Nguyen TQ, Burbrink FT 2016 Complex longitudinal diversification across South China and Vietnam in Stejneger;s pit viper, Viridovipera stejnegeri (Schmidt, 1925) (Reptilia: Serpentes: Viperidae). Molecular Ecology, 25: 2920–2936. 

  3. Yan F#, Jiang K#, Wang K, Jin JQ, Suwannapoom C, Li C, Vindum JV, Brown RM, Che J* 2016 The Australasian frog family Ceratobatrachidae in China, Myanmar and Thailand: discovery of a new Himalayan forest frog clade. Zoological Research, 37(1): 7-14. 

  4. Jiang K#, Yan F#, Wang K, Zou DH, Li C, Che J* 2016 A new genus and species of treefrog from Medog, southeastern Tibet, China (Anura, Rhacophoridae). Zoological Research, 37(1): 15-20. 

  5. Jiang K, Wang K, Yan F, Xie J, Zhou DH, Jiang JP, Li C, Che J* 2016 A new species of the genus Amolops (Amphibia: Ranidae) from southeastern Tibet, China. Zoological Research, 37(1): 31-40. 

   6. Jiang K, Wang K, Zhou DH, Yan F, Li PP, Che J* 2016 A new species of the genus Scutiger (Anura: Megophryidae) from Medog of southeastern Tibet, China. Zoological Research, 37(1): 21-30. 

  7. Wang K, Jiang K, Zhou DH, Yan F, Siler CD, Che J* 2016 Two New Species of Japalura (Squamata: Sauria: Agamidae) from the Hengduan Mountain Range, PR China. Zoological Research, 37(1): 41-56. 

  8. Che J*, Wang K 2016 AmphibiaChina: an online database of Chinese Amphibians. Zoological Research, 37(1): 57-59. 

  9. Suwannapoom C#, Yuan ZY#, Chen JM, Hou M, Zhao HP, Wang LJ, Nguyen ST, Nguyen QT, Murphy WR, Sullivan J, Mcleod SD, Che J* 2016  Taxonomic revision of the Chinese Limnonectes (Anura, Dicroglossidae) with the description of a new species from China and Myanmar. Zootaxa, 4093 (2): 181–200. 

  10. Yuan ZY, Suwannapoom C, Yan F, Poyarkov JRNA, Nguyen NS, Chen HM, Chomdej S, Murphy WR, Che J* 2016 Red River barrier and Pleistocene climatic fluctuations shaped the genetic structure of Microhyla fissipes complex (Anura: Microhylidae) in southern China and Indochina. Current Zoology, 1–13. 

  11. 蒋珂,王剀,杨军校,金洁琼,邹大虎,颜芳,潘虎君,车静* 2015 西藏两栖纲新纪录两种及缅甸树蛙记述.四川动物 (2).  

  2015 

  12. Shao Y, Wang LJ, Zhong L, Hong ML, Chen HM, Murphy RW, Wu DD*, Zhang YP*, Che J* 2015 Transcriptomes reveal the genetic mechanisms underlying ionic regulatory adaptations to salt in the crab-eating frog. Scientific Reports, 5: e17262. 

  13. Sun YB#, Xiong ZJ#, Xiang XY#, Liu SP, Zhou WW, Tu XL, Zhong L, Wang L, Wu DD, Zhang BL, Zhu CL, Yang MM, Chen HM, Li F, Zhou L, Feng SH, Huang C, Zhang GJ, Irwin D, Hillis DM*, Murphy RW, Yang HM, Che J*, Wang J*, Zhang YP* 2015. Whole-genome sequence of the Tibetan frog Nanorana parkeri and the comparative evolution of tetrapod genomes. Proc Natl Acad Sci U S A., 112(11), E1257-E1262. 

  14. Song B, Cheng SF, Sun YB, Zhong X, Jin JQ, Guan R, Murphy RW, Che J, Zhang YP, Liu X* 2015. A genome draft of the legless anguid lizard, Ophisaurus gracilis. Gigascience, 4:17 doi: 10.1186/s13742-015-0056-7. 

  15. Wang K, Jiang K, Pan G, Hou M, Slier CD, Che J* 2015 A New Species of Japalura (Squamata: Sauria: Agamidae) from Upper Lancang (Mekong) Valley of Eastern Tibet, China. Asian Herpetological Research, 6(3): 159–168. 

  16. Geng XF, Wei H, Shang H, Zhou M, Chen B, Zhang F, Zang X, Li P, Sun J, Che J, Zhang YP, Xu C* 2015 Data from proteomic analysis of the skin of Chinese giant salamander (Andrias davidianus). Data in Brief, 3: 99-102. 

  2014 

  17. Zhou WW, Zhang BL, Chen HM, Jin JQ, Yang JX, Wang YY, Jiang K, Murphy RW, Zhang YP*, Che J* 2014 DNA barcodes and species distribution models evaluate threats of global climate changes to genetic diversity: a case study from Nanorana parkeri (Anura: Dicroglossidae). Plos One, 9 (8) | e103899  

  18. Yuan ZY, Zhao HP, Jiang K, Hou M, He LZ, Murphy RW, Che J* 2014 Phylogenetic Relationships of the Genus Paramesotriton (Caudata: Salamandridae) with the Description of a New Species from Qixiling Nature Reserve, Jiangxi, Southeastern China and a Key to the species. Asian Herpetological Research, 5(2): 67–79. 

  19. Ngyyen SN, Jin JQ, Zhou WW, Vo BD, Nguyen LT, Che J, Murphy RW*, Zhang YP* 2014 DNA barcoding of Vietnamese bent-toed geckos (Squamata: Gekkonidae: Cyrtodactylus) and the description of a new species. Zootaxa, 3784(1): 48-66. 

  20. Chen X, Jiang K, Guo P, Huang S, Rao DQ, Ding L, Takeuchi H, Che J, Zhang YP, Myers EA, Buebeink FT* 2014 Assessing species boundaries and the phylogenetic position of the rare Szechwan ratsnake, Euprepiophis perlaceus (Serpentes: Colubridae), using coalescent-based methods. Molecular Phylogenetics and Evolution, 70: 130-136.   

  2013 

  21. Nguyen SN, Le TNT, Tran TAD, Orlov NL, Lathrop A, Macculloch RD, Le TDT, Jin JQ, Nguyen LT, Nguyen TT, Hoang DD, Che J*, Murphy RW*, Zhang YP* 2013. Phylogeny of the Cyrtodactylus irregularis species complex (Squamata: Gekkonidae) from Vietnam with the description of two new species. Zootaxa, 3737(4): 399414. 

  22. Yuan ZY, Jiang K, Ding LM, Zhang L, Che J* 2013. A New Newt of the Genus Cynops (Caudata: Salamandridae) from Guangdong, China. Asian Herpetological Research, 4(2): 116–123. 

  23. Jiang K, Yan F, Suwannapoom C, Chomdej S, Che J* 2013. A new species of the genus Leptolalax (Anura: Megophryidae) from northern Thailand. Asian Herpetological Research, 4(2): 100–108. 

  24. Murphy RW*, Crawford AJ, Bauer AM, Che J, Donnellan SC, Fritz U, Haddad CFB, Nagy ZT, Poyarkov NA, Vences M, Wang WZ, Zhang YP 2013. Cold Code: the global initiative to DNA barcode amphibians and nonavian reptiles. Molecular Ecology Resources, 13(2): 161–167. 

  25. Yan F, Zhou WW, Zhao HT, Yuan ZY, Wang YY, Jiang K, Jin JQ, Murphy RW, Che J*, Zhang YP* 2013. Geological events play a larger role than Pleistocene climatic fluctuations in the genetic structure of the montane stream-dwelling frog Quasipaa boulengeri (Anura: Dicroglossidae) in southern China. Molecular Ecology, 22(4): 1120–1133.  

  26. Zhou WW, Yan F, Fu J, Wu SF, Murphy RW, Che J*, Zhang YP* 2013. River islands, refugia, and genetic structuring in the endemic brown frog Rana kukunoris (Anura, Ranidae) of the Qinghai-Tibetan Plateau. Molecular Ecology, 22, 130-142. 

  2012 

  27. Jiang K, Chen TB, David P, Vogel G, Hou M, Yuan ZY, Meng YJ, Che J* 2012. On the occurrence of Oligodon joynsoni (Smith, 1917) in China (Squamata: Colubridae). Asian Herpetological Research, 3(4): 316-321. 

  28. Poyarkov NA, Che J, Min MS, Kuro-o M, Yan F, Li C, Iizuka K, Vieites DR* 2012. Monograph: Review of the systematics, morphology and distribution of Asian Clawed Salamanders, genus Onychodactylus (Amphibia, Caudata: Hynobiidae), with the description of four new species. Zootaxa, 3465: 1–106. 

  29. Jiang K, Rao DQ, Yuan SQ, Wang JS, Li PP, Hou M, Che MH, Che J* 2012. A new species of the genus Scutiger (Anura: Megophryidae) from southeastern Tibet, China. Zootaxa, 3388: 29–40. 

  30. Spinks P, Thomson RC, Zhang YP, Che J, Wu Y, Shaffer HB* 2012. Species boundaries and phylogenetic relationships in the critically endangered Asian box turtle genus Cuora. Molecular Phylogenetics and Evolution, 3: 656–667. 

  31. Zhou WW, Wen Y, Fu J, Xu YB, Jin JQ, Ding L, Min MS, Che J*, Zhang YP* 2012. Speciation in the Ranachensinensis complex and its relationship to the uplift of the Qinghai–Tibetan Plateau. Molecular Ecology, 21: 960973. 

  32. Dong BJ, Che J, Ding L, Huang S, Murphy RW, Zhao EM, Zhang YP* 2012. Testing hypotheses of Pleistocene population history using coalescent simulations: refugial isolation and Secondary Contact in Pseudepidalea raddei (Amphibia: Bufonidae). Asian Herpetological Research, 3(2): 103–113. 

  33. Che J, Chen HM, Yang JX, Jin JQ, Jiang K, Yang ZY, Murphy RW, Zhang YP* 2012. Universal COI primers for DNA barcoding amphibians. Molecular Ecology Resources, 12: 247258.   

  2011 

  34. Yuan ZY, Jiang K, Lu SQ, Yang JX, Nguyen QT, Nguyen TT, Jin JQ, Che J* 2011. A phylogeny of the Tylototritonasperrimus group (Caudata: Salamandridae) based on a mitochondrial study: suggestions for a taxonomic revision. Zoological Research, 32: 577584. 

  35. Yan F, Jiang K, Chen HM, Fang P, Jin JQ, Li Y, Wang SN, Murphy RW, Che J*, Zhang YP*. 2011. Matrilineal history of the Rana longicrus species group (Rana, Ranidae, Anura) and the description of a new species from Hunan, southern China. Asian Herpetological Research, 2: 6171.   

  2010 

  36. Che J, Zhou WW, Hu JS, Yan F, Papenfuss TJ, Wake DB, Zhang YP* 2010. From the Cover: Spiny Frogs (Paini) illuminate the history of the Himalayan region and Southeast Asia. Proceedings of the National Academy of Sciences, USA, 107: 1376513770. 

  37. Zhang DR, Chen MY, Murphy RW, Che J, Pang JF, Hu JS, Luo J, Wu SJ, Ye H, Zhang YP* 2010. Genealogy and palaeodrainage basins in Yunnan Province: phylogeography of the Yunnan spiny frog, Nanorana yunnanensis (Dicroglossidae). Molecular Ecology, 19: 34063420. 

  38. Yang JX, Zhou WW, Rao DQ, Poyarkov AN, Kuzmin SL, Che J* 2010. The validity and systematic position of Ranaaltaica (Rana: Ranidae): Results of a phylogenetic analysis. Zoological Research, 31: 353–360. 

  2009 

  39. Li J, Che J, Murphy RW, Zhao H, Zhao EM, Rao DQ, Zhang YP* 2009. New insights to the molecular phylogenetics and generic assessment in the Rhacophoridae (Amphibia: Anura) based on five nuclear and three mitochondrial genes, with comments on the evolution of reproduction. Molecular Phylogenetics and Evolution, 53: 509–522. 

  40. Sang NN, Murphy RW, Orlov NL, Che J 2009. The herpetofauna of Hon Chong area, KienGiang Province, southern Vietnam”, Beleaguered Hills: Managing the Biodiversity of the Remaining Karst Hills of KienGiang, Vietnam. NongNghiep Publishing, Ho Chi Minh City. pp. 7991. (in English) 

  41. Bain RH, Stuart BL, Truong NQ, Che J, Rao DQ 2009. A new Odorrana (Amphibia: Ranidae) from Vietnam and China. Copeia, 2: 348–362. 

 42. Che J, Hu J, Zhou W, Murphy RW, PapenfussTJ, Chen MY, Rao DQ, Li P, Zhao EM*, Zhang YP* 2009. Phylogeny of the Asian spiny frog tribe Paini (Family Dicroglossidae) sensu Dubois. Molecular Phylogenetics and Evolution, 50: 59–73.   

  2008 

  43. Min MS, Park SK, Che J, Park DS, Lee H 2008. Genetic diversity among local populations of the gold-spotted pond frog, Rana plancyichosenica (Amphibia: Ranidae) assessed by mitochondrial cytochrome b gene and control region sequences. Korean Journal of Systematic Zoology, 24: 25–32. 

  44. Che J, Wen Y, Zhou W, Halike M 2008. Confirmation of Buforaddei in Xinjiang. Sichuan Journal of Zoology, 27:422–423. (in Chinese) 

  45. Zhao HT, Che J*, Zhou W, Chen YX, Zhao HP, Zhang YP* 2008. A new species of Paramesotriton (Caudata: Salamandridae) from Guizhou Province, China. Zootaxa, 1775: 51–60.  

  46. Li JT, Che J, Bain RH, Zhao EM, Zhang YP* 2008. Molecular phylogeny of Rhacophoridae (Anura): A framework of taxonomic reassignment of species within the genera Aquixalus, Chiromantis, Rhacophorus, and Philautus. Molecular Phylogenetics and Evolution, 48:302–312.  

  2007 

  47. Cai HX, Che J, Pang JF, Zhao EM, Zhang YP* 2007. Paraphyly of Chinese Amolops (Anura, Ranidae) and phylogenetic position of the rare Chinese frog, Amolops tormotus. Zootaxa, 1531:49–55. 

  48. Che J, Pang J, Zhao H, Wu GF, Zhao EM, Zhang YP* 2007. Molecular phylogeny of the Chinese ranids inferred from nuclear and mitochondrial DNA sequences. Biochemical Systematics and Ecology, 35:29–39. 

  49. Che J, Pang J, Zhao H, Wu GF, Zhao EM, Zhang YP* 2007. Phylogeny of Raninae (Anura: Ranidae) inferred from mitochondrial and nuclear sequences. Molecular Phylogenetics and Evolution, 43:1–13. 

  50. Che J, Pang J, Zhao EM, Matsui M, Zhang YP* 2007. Phylogenetic relationships of the Chinese brown frogs (genus Rana) inferred from partial mitochondrial 12S and 16S rRNA gene sequences. Zoological Science, 24:71–80. 

研究队伍

工作人员:

Murphy W. Robert: 特聘教授 

bob.murphy@utoronto.ca   

孙艳波: 副研究员 

sunyanbo@mail.kiz.ac.cn   

周炜帏: 项目副研究员 

zhouweiwei@mail.kiz.ac.cn 

颜芳: 助理研究员 

yanfang@mail.kiz.ac.cn 

陈宏满: 工程师 

chenhm@mail.kiz.ac.cn 

金洁琼: 实验师 

jinjq@mail.kiz.ac.cn 

邹大虎: 项目聘用助理 

bigtigerzou@163.com 

蒋珂: 项目聘用助理 

jiangke87615@hotmail.com 

博士后

Chatmongkon Suwannapoom(泰国) 

研究生:

博士研究生

  陈进民 (2015) 

  张宝林 (2015) 

  高伟 (2015) 

  Nneji Lotanna Micah (2015) 

  吴云鹤 (2016) 

  张毅 (2016) 

 硕士研究生

  付婷婷 (2014) 

  米雪 (2015) 

  徐凯 (2016) 

  徐伟 (2016) 

  Felista Kasyoka (2016) 

 

 
地址:云南省昆明市教场东路32号 邮编:650223  联系电话:0871-5199125