1.     L. Chen^#, Q. Qiu^#, Y. Jiang^#, K. Wang^#, Z. Lin^#, Z. Li^#, F. Bibi, Y. Yang, J. Wang, W. Nie, W. Su, G. Liu, Q. Li, W. Fu, X. Pan, C. Liu, J. Yang, C. Zhang, Y. Yin, Y. Wang, Y. Zhao, C. Zhang, Z. Wang, Y. Qin, W. Liu, B. Wang, Y. Ren, R. Zhang, Y. Zeng, R. R. da Fonseca, B. Wei, R. Li, W. Wan, R. Zhao, W. Zhu, Y. Wang, S. Duan, Y. Gao, Y. E. Zhang, C. Chen, C. Hvilsom, C. W. Epps, L. G. Chemnick, Y. Dong, S. Mirarab, H. R. Siegismund, O. A. Ryder, M. T. P. Gilbert, H. A. Lewin, G. Zhang*, R. Heller* and W. Wang* (2019). Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits. Science 364(6446).

2.     S. Feng^#, Q. Fang, R. Barnett, C. Li, S. Han, M. Kuhlwilm, L. Zhou, H. Pan, Y. Deng, G. Chen, A. Gamauf, F. Woog, R. Prys-Jones, T. Marques-Bonet, M. T. P. Gilbert and G. Zhang* (2019). The Genomic Footprints of the Fall and Recovery of the Crested Ibis. Current Biology 29(2): 340-349 e347.

3.     Y. He^#, H. Pan, G. Zhang* and S. He* (2019). Comparative study on pattern recognition receptors in non-teleost ray-finned fishes and their evolutionary significance in primitive vertebrates. Science China Life Sciences 62(4): 566-578.

4.     H. Pan^#, T. L. Cole^#, X. Bi, M. Fang, C. Zhou, Z. Yang, D. T. Ksepka, T. Hart, J. L. Bouzat, L. S. Argilla, M. F. Bertelsen, P. D. Boersma, C. A. Bost, Y. Cherel, P. Dann, S. R. Fiddaman, P. Howard, K. Labuschagne, T. Mattern, G. Miller, P. Parker, R. A. Phillips, P. Quillfeldt, P. G. Ryan, H. Taylor, D. R. Thompson, M. J. Young, M. R. Ellegaard, M. T. P. Gilbert, M. S. Sinding, G. Pacheco, L. D. Shepherd, A. J. D. Tennyson, S. Grosser, E. Kay, L. J. Nupen, U. Ellenberg, D. M. Houston, A. H. Reeve, K. Johnson, J. F. Masello, T. Stracke, B. McKinlay, P. G. Borboroglu, D. X. Zhang and G. Zhang* (2019). High-coverage genomes to elucidate the evolution of penguins. Gigascience 8(9).

5.     J. Stiller*. and G. Zhang* (2019). Comparative Phylogenomics, a Stepping Stone for Bird Biodiversity Studies. Diversity 11(7).

6.     Lewin HA^#*, Robinsone GE, Kressf WJ, Bakerg WJ, Coddingtonf J, Crandallh KA, Durbini R, Edwardsk SV, Forestg F′, Gilbertm MTP, Goldsteino MM, Grigorievp IV, Hackettr KJ, Hausslers D, Jarvisu ED, Johnsonv WE, Patrinosw A, Richardsx S, Castilla-Rubioy JC, van Sluys MA, Soltiscc PS, Xu X, Yang HM, and Zhang GJ*. 2018. Earth BioGenome Project: Sequencing life for the future of life. Proceedings of the National Academy of Sciences of the United States of America. 2018. 115(17): p. 4325-4333.

7.     Kukekova AV^#*, Johnson JL, Xiang XY, Feng SH, Liu SP, Rando HM, Kharlamova AV, Herbeck Y, Serdyukova NA, Xiong ZJ, Beklemischeva V, Koepfli KP, Gulevich RG, Vladimirova AV, Hekman JP, Perelman PL, Graphodatsky AS, O'Brien SJ, Wang X, Clark AG, Acland GM, Trut LN, Zhang GJ*. 2018. Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours. Nature Ecology & Evolution. 2018. 2(9): p. 1479-1491.

8.     Zhang GJ^#*. 2018. The first AsiaEvo conference, connecting Asian evolutionary biologists to the world. National Science Review. 2018. 5(5): p. 614-616

9.     Zhang, GJ^#*. The bird’s-eye view on chromosome evolution. Genome Biology 19, 201 (2018).

10. Qiu BT^#, Larsen RS, Chang NC, Wang J, Boomsma JJ*, Zhang GJ*, 2018. Towards reconstructing the ancestral brain gene-network regulating caste differentiation in ants. Nature Ecology & Evolution. 2018. 2(11): p. 1782-1791.

11. Rogers RL^#, Zhou L^#, Chu C, Márquez R, Corl A, Linderoth T, Freeborn L, MacManes MD, Xiong Z, Zheng J, Guo C, Xun X, Kronforst MR, Summers K, Wu Y, Yang H, Richards-Zawacki CL, Zhang GJ* and Nielsen R*.  Genomic Takeover by Transposable Elements in the Strawberry Poison Frog. Molecular Biology and Evolution. 2018. 35(12): 2913-2927.

12. Zhang CZ ^#, Chen L^#, Zhou Y#, Wang K, Chemnick LG, Ryder OA, Wang W, Zhang GJ* and Qiu Q*. 2017. Draft genome of the milu (Elaphurus davidianus). Gigascience. 2017. 7(2).

13. Avalos A, Pan H, Li C, Acevedo Gonzalez JP, Rendon G, Fields CJ, Brown PJ, Giray T, Robinson GE*, Hudson ME*, Zhang G*. A soft selective sweep during rapid evolution of gentle behaviour in an Africanized honeybee. Nat Commun, 2017, 8:1550.(Rane, Clarke et al. 2019)

14. Hargreaves A, Zhou L, Christensen J, Marlétaz F, Liu S, Li F, Jansen P, Spiga E, Hansen M, Pedersen S, Biswas S, Serikawa K, Fox B, Taylor W, Mulley J, Zhang G*, Heller R*, Holland P*. Genome sequence of a diabetes-prone rodent reveals a mutation hotspot around the ParaHox gene cluster. Proc Natl Acad Sci U S A, 2017, 114(29):7677-7682.

15. Gao J, Li Q, Wang Z, Zhou Y, Martelli P, Li F, Xiong Z, Wang J, Yang H, Zhang G*. Sequencing, de novo assembling and annotating the genome of the endangered Chinese crocodile lizard Shinisaurus crocodilurus. GigaScience, 2017, 6(7):1-6.

16. Boomsma J, Brady S, Dunn R, Gadau J, Heinze J, Keller L, Moreau C, Sanders N, Schrader L, Schultz T, Sundstrom L, Ward P, Wcislo W, Zhang G* & The GAGA Consortium. Forum The Global Ant Genomics Alliance (GAGA). Myrmecol News, 2017, 25(2):61-66.

17. Seki R, Li C, Fang Q, Hayashi S, Egawa S, Hu J, Xu L, Pan H, Kondo M, Sato T, Matsubara H, Kamiyama N, Kitajima K, Saito D, Liu Y, Gilbert TM, Zhou Q, Xu X, Shiroishi T, Irie N*, Tamura K*. & Zhang G*. Functional roles of Aves class-specific cis-regulatory elements on macroevolution of bird-specific features. Nat Commun, 2017, 8, 14229.

18. Xiong Z, Li F, Li Q, Zhou L, Gamble T, Zheng J, Kui L, Li C, Li S, Yang H, Zhang G*. Draft genome of the leopard gecko, Eublepharis macularius. GigaScience, 2016, 5: 49.

19. Pan H, Yu H, Ravi V, Li C, Lee PA, Lian MM, Tay BH, Brenner S, Wang J, Yang H, Zhang G*, Venkatesh B*. The genome of the largest bony fish, ocean sunfish (Mola mola), provides insights into its fast growth rate. GigaScience, 2016, 5 (1):36.

20. Wang Z, Lian J, Li Q, Zhang P, Zhou Y, Zhan X, Zhang G*. RES-Scanner: a software package for genome-wide identification of RNA-editing sites. GigaScience, 2016, 5 (1): 37.

21. Nygaard S, Hu H, Li, C, Schi？tt M, Chen Z, Yang Z, Xie Q, Ma C, Deng Y, Dikow BR, Rabeling C, Nash RD, Wcislo TW, Brady GS, Schultz RT, Zhang G*, Boomsma J*. Reciprocal genomic evolution in the ant-fungus agricultural symbiosis. Nat Commun, 2016, 7.

22. Zhang G*, Rahbek C, Graves GR, Lei F, Jarvis ED, & Gilbert MT. Genomics: Bird sequencing project takes off. Nature, 2015, 522(7554):34.

23. Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Alfaro-Nunez A, Narula N, Liu L, Burt D, Ellegren H, Edwards SV, Stamatakis A, Mindell DP, Cracraft J, Braun EL, Warnow T, Jun W, Gilbert MT, Zhang G, & Avian Phylogenomics C. Phylogenomic analyses data of the avian phylogenomics project. Gigascience, 2015, 4:4.

24. Zhang J, Li C, Zhou Q, &Zhang G*. Improving the ostrich genome assembly using optical mapping data. Gigascience, 2015, 4:24.

25. Georges A*, Li Q, Lian J, O'Meally D, Deakin J, Wang Z, Zhang P, Fujita M, Patel HR, Holleley CE, Zhou Y, Zhang X, Matsubara K, Waters P, Graves JA, Sarre SD, & Zhang G*. High-coverage sequencing and annotated assembly of the genome of the Australian dragon lizard Pogona vitticeps. Gigascience, 2015, 4:45.

26. Kapheim KM, Pan H, Li C, Salzberg SL, Puiu D, Magoc T, Robertson HM, Hudson ME, Venkat A, Fischman BJ, Hernandez A, Yandell M, Ence D, Holt C, Yocum GD, Kemp WP, Bosch J, Waterhouse RM, Zdobnov EM, Stolle E, Kraus FB, Helbing S, Moritz RF, Glastad KM, Hunt BG, Goodisman MA, Hauser F, Grimmelikhuijzen CJ, Pinheiro DG, Nunes FM, Soares MP, Tanaka ED, Simoes ZL, Hartfelder K, Evans JD, Barribeau SM, Johnson RM, Massey JH, Southey BR, Hasselmann M, Hamacher D, Biewer M, Kent CF, Zayed A, Blatti C, 3rd, Sinha S, Johnston JS, Hanrahan SJ, Kocher SD, Wang J*, Robinson GE*, & Zhang G*. Social evolution. Genomic signatures of evolutionary transitions from solitary to group living. Science, 2015, 348(6239):1139-1143.

27. Zhang G*, Jarvis ED, & Gilbert MT. Avian genomes. A flock of genomes. Introduction. Science, 2014,346(6215):1308-1309.

28. Zhang G*, Li B, Li C, Gilbert MT, Jarvis ED, Wang J, & Avian Genome C. Comparative genomic data of the Avian Phylogenomics Project. Gigascience, 2014, 3(1):26.

29. Chen L, Tang L, Xiang H, Jin L, Li Q, Dong Y, Wang W*, & Zhang G*. Advances in genome editing technology and its promising application in evolutionary and ecological studies. Gigascience, 2014, 3:24.

30. Jarvis ED*, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, Li H, Zhou L, Narula N, Liu L, Ganapathy G, Boussau B, Bayzid MS, Zavidovych V, Subramanian S, Gabaldon T, Capella-Gutierrez S, Huerta-Cepas J, Rekepalli B, Munch K, Schierup M, Lindow B, Warren WC, Ray D, Green RE, Bruford MW, Zhan X, Dixon A, Li S, Li N, Huang Y, Derryberry EP, Bertelsen MF, Sheldon FH, Brumfield RT, Mello CV, Lovell PV, Wirthlin M, Schneider MP, Prosdocimi F, Samaniego JA, Vargas Velazquez AM, Alfaro-Nunez A, Campos PF, Petersen B, Sicheritz-Ponten T, Pas A, Bailey T, Scofield P, Bunce M, Lambert DM, Zhou Q, Perelman P, Driskell AC, Shapiro B, Xiong Z, Zeng Y, Liu S, Li Z, Liu B, Wu K, Xiao J, Yinqi X, Zheng Q, Zhang Y, Yang H, Wang J, Smeds L, Rheindt FE, Braun M, Fjeldsa J, Orlando L, Barker FK, Jonsson KA, Johnson W, Koepfli KP, O'Brien S, Haussler D, Ryder OA, Rahbek C, Willerslev E, Graves GR, Glenn TC, McCormack J, Burt D, Ellegren H, Alstrom P, Edwards SV, Stamatakis A, Mindell DP, Cracraft J, Braun EL, Warnow T, Jun W*, Gilbert MT*& Zhang G*. Whole-genome analyses resolve early branches in the tree of life of modern birds. Science, 2014, 346(6215):1320-1331. (Flagship paper in Special Issue of Avian phylogenomics Project)

31. Zhou Q*, Zhang J, Bachtrog D, An N, Huang Q, Jarvis ED, Gilbert MT, & Zhang G*. Complex evolutionary trajectories of sex chromosomes across bird taxa. Science, 2014, 346(6215):1246338.

32. Zhang G*, Li C, Li Q, Li B, Larkin DM, Lee C, Storz JF, Antunes A, Greenwold MJ, Meredith RW, Odeen A, Cui J, Zhou Q, Xu L, Pan H, Wang Z, Jin L, Zhang P, Hu H, Yang W, Hu J, Xiao J, Yang Z, Liu Y, Xie Q, Yu H, Lian J, Wen P, Zhang F, Li H, Zeng Y, Xiong Z, Liu S, Zhou L, Huang Z, An N, Wang J, Zheng Q, Xiong Y, Wang G, Wang B, Wang J, Fan Y, da Fonseca RR, Alfaro-Nunez A, Schubert M, Orlando L, Mourier T, Howard JT, Ganapathy G, Pfenning A, Whitney O, Rivas MV, Hara E, Smith J, Farre M, Narayan J, Slavov G, Romanov MN, Borges R, Machado JP, Khan I, Springer MS, Gatesy J, Hoffmann FG, Opazo JC, Hastad O, Sawyer RH, Kim H, Kim KW, Kim HJ, Cho S, Li N, Huang Y, Bruford MW, Zhan X, Dixon A, Bertelsen MF, Derryberry E, Warren W, Wilson RK, Li S, Ray DA, Green RE, O'Brien SJ, Griffin D, Johnson WE, Haussler D, Ryder OA, Willerslev E, Graves GR, Alstrom P, Fjeldsa J, Mindell DP, Edwards SV, Braun EL, Rahbek C, Burt DW, Houde P, Zhang Y, Yang H, Wang J, Avian Genome C, Jarvis ED*, Gilbert MT*& Wang J*. Comparative genomics reveals insights into avian genome evolution and adaptation. Science, 2014,346(6215):1311-1320. (Flagship paper in Special Issue of Avian phylogenomics Project)

33. Cui J*, Zhao W, Huang Z, Jarvis ED, Gilbert MT, Walker PJ, Holmes EC, & Zhang G*. Low frequency of paleoviral infiltration across the avian phylogeny. Genome Biol, 2014, 15(12):539.

34. Wang Z, Zhang J, Yang W, An N, Zhang P, Zhang G*, & Zhou Q*. Temporal genomic evolution of bird sex chromosomes. BMC Evol Biol, 2014,14:250.

35. Poulsen M, Hu H, Li C, Chen Z, Xu L, Otani S, Nygaard S, Nobre T, Klaubauf S, Schindler PM, Hauser F, Pan H, Yang Z, Sonnenberg AS, de Beer ZW, Zhang Y, Wingfield MJ, Grimmelikhuijzen CJ, de Vries RP, Korb J, Aanen DK, Wang J, Boomsma JJ*, & Zhang G*. Complementary symbiont contributions to plant decomposition in a fungus-farming termite. Proc Natl Acad Sci U S A, 2014,111(40):14500-14505.

36. Li Q, Wang Z, Lian J, Schiott M, Jin L, Zhang P, Zhang Y, Nygaard S, Peng Z, Zhou Y, Deng Y, Zhang W, Boomsma JJ*, & Zhang G*. Caste-specific RNA editomes in the leaf-cutting ant Acromyrmex echinatior. Nat Commun, 2014,5:4943.

37. Terrapon N, Li C, Robertson HM, Ji L, Meng X, Booth W, Chen Z, Childers CP, Glastad KM, Gokhale K, Gowin J, Gronenberg W, Hermansen RA, Hu H, Hunt BG, Huylmans AK, Khalil SM, Mitchell RD, Munoz-Torres MC, Mustard JA, Pan H, Reese JT, Scharf ME, Sun F, Vogel H, Xiao J, Yang W, Yang Z, Yang Z, Zhou J, Zhu J, Brent CS, Elsik CG, Goodisman MA, Liberles DA, Roe RM, Vargo EL, Vilcinskas A, Wang J, Bornberg-Bauer E, Korb J, Zhang G*, & Liebig J*. Molecular traces of alternative social organization in a termite genome.Nat Commun, 2014, 5:3636.

38. Shao C, Li Q, Chen S, Zhang P, Lian J, Hu Q, Sun B, Jin L, Liu S, Wang Z, Zhao H, Jin Z, Liang Z, Li Y, Zheng Q, Zhang Y, Wang J, & Zhang G. Epigenetic modification and inheritance in sexual reversal of fish. Genome Res, 2014, 24(4):604-615.

39. Chen S*, Zhang G, Shao C, Huang Q, Liu G, Zhang P, Song W, An N, Chalopin D, Volff JN, Hong Y, Li Q, Sha Z, Zhou H, Xie M, Yu Q, Liu Y, Xiang H, Wang N, Wu K, Yang C, Zhou Q, Liao X, Yang L, Hu Q, Zhang J, Meng L, Jin L, Tian Y, Lian J, Yang J, Miao G, Liu S, Liang Z, Yan F, Li Y, Sun B, Zhang H, Zhang J, Zhu Y, Du M, Zhao Y, Schartl M*, Tang Q*, & Wang J*. Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle. Nat Genet, 2014, 46(3):253-260. (co-first author)

40. Wang Z, Pascual-Anaya J, Zadissa A, Li W, Niimura Y, Huang Z, Li C, White S, Xiong Z, Fang D, Wang B, Ming Y, Chen Y, Zheng Y, Kuraku S, Pignatelli M, Herrero J, Beal K, Nozawa M, Li Q, Wang J, Zhang H, Yu L, Shigenobu S, Wang J, Liu J, Flicek P, Searle S, Wang J, Kuratani S, Yin Y, Aken B, Zhang G*, & Irie N*. The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan. Nat Genet, 2013,45(6):701-706.

41. Orlando L, Ginolhac A, Zhang G, Froese D, Albrechtsen A, Stiller M, Schubert M, Cappellini E, Petersen B, Moltke I, Johnson PL, Fumagalli M, Vilstrup JT, Raghavan M, Korneliussen T, Malaspinas AS, Vogt J, Szklarczyk D, Kelstrup CD, Vinther J, Dolocan A, Stenderup J, Velazquez AM, Cahill J, Rasmussen M, Wang X, Min J, Zazula GD, Seguin-Orlando A, Mortensen C, Magnussen K, Thompson JF, Weinstock J, Gregersen K, Roed KH, Eisenmann V, Rubin CJ, Miller DC, Antczak DF, Bertelsen MF, Brunak S, Al-Rasheid KA, Ryder O, Andersson L, Mundy J, Krogh A, Gilbert MT, Kjaer K, Sicheritz-Ponten T, Jensen LJ, Olsen JV, Hofreiter M, Nielsen R, Shapiro B, Wang J, & Willerslev E. Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse. Nature, 2013,499(7456):74-78. (co-first author)

42. Fan Y, Huang ZY, Cao CC, Chen CS, Chen YX, Fan DD, He J, Hou HL, Hu L, Hu XT, Jiang XT, Lai R, Lang YS, Liang B, Liao SG, Mu D, Ma YY, Niu YY, Sun XQ, Xia JQ, Xiao J, Xiong ZQ, Xu L, Yang L, Zhang Y, Zhao W, Zhao XD, Zheng YT, Zhou JM, Zhu YB, Zhang GJ*, Wang J*, & Yao YG*. Genome of the Chinese tree shrew. Nat Commun, 2013, 4:1426.

43. Zhang G*, Cowled C, Shi Z, Huang Z, Bishop-Lilly KA, Fang X, Wynne JW, Xiong Z, Baker ML, Zhao W, Tachedjian M, Zhu Y, Zhou P, Jiang X, Ng J, Yang L, Wu L, Xiao J, Feng Y, Chen Y, Sun X, Zhang Y, Marsh GA, Crameri G, Broder CC, Frey KG, Wang LF*, & Wang J*. Comparative analysis of bat genomes provides insight into the evolution of flight and immunity. Science, 2013,339(6118):456-460.

44. Bonasio R, Li Q, Lian J, Mutti NS, Jin L, Zhao H, Zhang P, Wen P, Xiang H, Ding Y, Jin Z, Shen SS, Wang Z, Wang W, Wang J, Berger SL*, Liebig J*, Zhang G*, & Reinberg D*. Genome-wide and caste-specific DNA methylomes of the ants Camponotus floridanus and Harpegnathos saltator. Curr Biol, 2012, 22(19):1755-1764.

45. Qiu Q, Zhang G, Ma T, Qian W, Wang J, Ye Z, Cao C, Hu Q, Kim J, Larkin DM, Auvil L, Capitanu B, Ma J, Lewin HA, Qian X, Lang Y, Zhou R, Wang L, Wang K, Xia J, Liao S, Pan S, Lu X, Hou H, Wang Y, Zang X, Yin Y, Ma H, Zhang J, Wang Z, Zhang Y, Zhang D, Yonezawa T, Hasegawa M, Zhong Y, Liu W, Zhang Y, Huang Z, Zhang S, Long R, Yang H, Wang J, Lenstra JA, Cooper DN, Wu Y, Wang J, Shi P, Wang J, & Liu J. The yak genome and adaptation to life at high altitude. Nat Genet, 2012,44(8):946-949. (co-first author)

46. Li Y, Robins JH, Ye J, Huang Z, Wen Q, & Zhang G. Adaptive diversity of innate immune receptor family short pentraxins in Murinae. FEBS Lett, 2012, 586(6):798-803.

47. Kim EB, Fang X, Fushan AA, Huang Z, Lobanov AV, Han L, Marino SM, Sun X, Turanov AA, Yang P, Yim SH, Zhao X, Kasaikina MV, Stoletzki N, Peng C, Polak P, Xiong Z, Kiezun A, Zhu Y, Chen Y, Kryukov GV, Zhang Q, Peshkin L, Yang L, Bronson RT, Buffenstein R, Wang B, Han C, Li Q, Chen L, Zhao W, Sunyaev SR, Park TJ, Zhang G*, Wang J*, & Gladyshev VN*. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Nature, 2011,479(7372):223-227.

48. Yan G, Zhang G, Fang X, Zhang Y, Li C, Ling F, Cooper DN, Li Q, Li Y, van Gool AJ, Du H, Chen J, Chen R, Zhang P, Huang Z, Thompson JR, Meng Y, Bai Y, Wang J, Zhuo M, Wang T, Huang Y, Wei L, Li J, Wang Z, Hu H, Yang P, Le L, Stenson PD, Li B, Liu X, Ball EV, An N, Huang Q, Zhang Y, Fan W, Zhang X, Li Y, Wang W, Katze MG, Su B, Nielsen R, Yang H, Wang J, Wang X, & Wang J. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Nat Biotechnol, 2011, 29(11):1019-1023. (co-first author)

49. Nygaard S, Zhang G, Schiott M, Li C, Wurm Y, Hu H, Zhou J, Ji L, Qiu F, Rasmussen M, Pan H, Hauser F, Krogh A, Grimmelikhuijzen CJ, Wang J, & Boomsma JJ. The genome of the leaf-cutting ant Acromyrmex echinatior suggests key adaptations to advanced social life and fungus farming. Genome Res, 2011, 21(8):1339-1348. (co-first author)

50. Zhang G*, Pei Z, Ball EV, Mort M, Kehrer-Sawatzki H, & Cooper DN. Cross-comparison of the genome sequences from human, chimpanzee, Neanderthal and a Denisovan hominin identifies novel potentially compensated mutations. Hum Genomics, 2011, 5(5):453-484.

51. Zhang G, Pei Z, Krawczak M, Ball EV, Mort M, Kehrer-Sawatzki H, & Cooper DN. Triangulation of the human, chimpanzee, and Neanderthal genome sequences identifies potentially compensated mutations. Hum Mutat, 2010,31(12):1286-1293.

52. Bonasio R, Zhang G, Ye C, Mutti NS, Fang X, Qin N, Donahue G, Yang P, Li Q, Li C, Zhang P, Huang Z, Berger SL, Reinberg D, Wang J, & Liebig J. Genomic comparison of the ants Camponotus floridanus and Harpegnathos saltator. Science, 2010,329(5995):1068-1071. (co-first author)

53. Zhang G, Guo G, Hu X, Zhang Y, Li Q, Li R, Zhuang R, Lu Z, He Z, Fang X, Chen L, Tian W, Tao Y, Kristiansen K, Zhang X, Li S, Yang H, Wang J*, & Wang J*. Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome. Genome Res, 2010, 20(5):646-654.

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61. Mak SST^#, Gopalakrishnan S^#, Car？e C^#, Geng CY, Liu SL, Sinding MHS, Kuderna LFK, Zhang WW, Fu SJ, Vieira FG, Germonpre M, Bocherens H, Fedorov S, Petersen B, Sicheritz-Ponten T, Marques-Bonet T, Zhang GJ, Jiang H*, Gilbert MTP*. 2017. Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing. Gigascience. 2017. 6(8).

62. Hu HY^#, Uesaka M^#, Guo S^#, Shimai K, Lu TM, Li F, Fujimoto S, Ishikawa M, Liu SP, Sasagawa Y, Zhang GJ, Kuratani S, Yu JK, Kusakabe TG, Khaitovich P, Irie N* and the EXPANDE Consortium. 2017. Constrained vertebrate evolution by pleiotropic genes. Nature Ecology & Evolution. 2017. 1(11): p. 1722-1730.

63. Shao C, Bao B, Xie Z, Chen X, Li B, Jia X, Yao Q, Ortí G, Li W, Li X, Hamre K, Xu J, Wang L, Chen F, Tian Y, Schreiber AM, Wang N, Wei F, Zhang J, Dong Z, Gao L, Gai J, Sakamoto T, Mo S, Chen W, Shi Q, Li H, Xiu Y, Li Y, Xu W, Shi Z, Zhang G, Power D*, Wang Q*, Schartl M* & Chen S*. The genome and transcriptome of Japanese flounder provide insights into flatfish asymmetry. Nat Genet, 2017, 49(1): 119-124.

64. Yin W*, Wang Z, Li Q, Lian J, Zhou Y, Lu B, Jin L, Qiu P, Zhang P, Zhu W, Wen B, Huang Y, Lin Z, Qiu B, Su X, Yang H, Zhang G, Yan G, Zhou Q*. Evolutionary trajectories of snake genes and genomes revealed by comparative analyses of five-pacer viper. Nat Commun, 2016, 7: 13107

65. Sun YB, Xiong ZJ, Xiang XY, Liu SP, Zhou WW, Tu XL, Zhong L, Wang L, Wu DD, Zhang BL, Zhu CL, Yang MM, Chen HM, Li F, Zhou L, Feng SH, Huang C, Zhang GJ, Irwin D, Hillis DM*, Murphy RW, Yang HM, Che J*, Wang J*, & Zhang YP*. Whole-genome sequence of the Tibetan frog Nanorana parkeri and the comparative evolution of tetrapod genomes. Proc Natl Acad Sci U S A, 2015,112(11):E1257-1262.

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71. Meredith RW, Zhang G, Gilbert MT, Jarvis ED, & Springer MS. Evidence for a single loss of mineralized teeth in the common avian ancestor. Science, 2014, 346(6215):1254390.

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73. You X, Bian C, Zan Q, Xu X, Liu x, Chen J, Wang J, Qiu Y, Li W, Zhang X, Sun Y, Chen S, Hong W, Li Y, Cheng S, Fan G, Shi C, Liang J, Tang TY, Yang C, Ruan Z, Bai J, Peng C, Mu Q, Lu J, Fan M, Yang S, Huang Z, Jiang X, Fang X, Zhang G, Zhang Y, Polgar G, Yu H, Liu Z, Zhang G, Ravi V, Coon SL, Wang J, Yang H, Venkatesh B, Wang J, Shi Q. Mudskipper genomes provide insights into the terrestrial adaptation of amphibious fishes. Nat Commun, 2014, 5: 5594.

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近五年发表的10篇代表性论文 (*通讯作者)：

1.  Qiu BT^#, Larsen RS, Chang NC, Wang J, Boomsma JJ*, Zhang GJ*, 2018. Towards reconstructing the ancestral brain gene-network regulating caste differentiation in ants. Nature Ecology & Evolution. 2018. 2(11): p. 1782-1791

2.  Avalos A, Pan H, Li C, Acevedo Gonzalez JP, Rendon G, Fields CJ, Brown PJ, Giray T, Robinson GE*, Hudson ME*, Zhang G*. A soft selective sweep during rapid evolution of gentle behaviour in an Africanized honeybee. Nat Commun, 2017, 8:1550.

3.  Nygaard S, Hu H, Li, C, Schi？tt M, Chen Z, Yang Z, Xie Q, Ma C, Deng Y, Dikow BR, Rabeling C, Nash RD, Wcislo TW, Brady GS, Schultz RT, Zhang G*, Boomsma J*. Reciprocal genomic evolution in the ant-fungus agricultural symbiosis. Nat Commun, 2016, 7.

4.  Kapheim KM, Pan H, Li C, Salzberg SL, Puiu D, Magoc T, Robertson HM, Hudson ME, Venkat A, Fischman BJ, Hernandez A, Yandell M, Ence D, Holt C, Yocum GD, Kemp WP, Bosch J, Waterhouse RM, Zdobnov EM, Stolle E, Kraus FB, Helbing S, Moritz RF, Glastad KM, Hunt BG, Goodisman MA, Hauser F, Grimmelikhuijzen CJ, Pinheiro DG, Nunes FM, Soares MP, Tanaka ED, Simoes ZL, Hartfelder K, Evans JD, Barribeau SM, Johnson RM, Massey JH, Southey BR, Hasselmann M, Hamacher D, Biewer M, Kent CF, Zayed A, Blatti C, 3rd, Sinha S, Johnston JS, Hanrahan SJ, Kocher SD, Wang J*, Robinson GE*, & Zhang G*. Social evolution. Genomic signatures of evolutionary transitions from solitary to group living. Science, 2015, 348(6239):1139-1143.

5.  Zhang G*, Rahbek C, Graves GR, Lei F, Jarvis ED, & Gilbert MT. Genomics: Bird sequencing project takes off. Nature, 2015, 522(7554):34.

6.  Zhang G*, Jarvis ED, & Gilbert MT. Avian genomes. A flock of genomes. Introduction. Science, 2014, 346(6215):1308-1309.

7.  Jarvis ED*, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, Li H, Zhou L, Narula N, Liu L, Ganapathy G, Boussau B, Bayzid MS, Zavidovych V, Subramanian S, Gabaldon T, Capella-Gutierrez S, Huerta-Cepas J, Rekepalli B, Munch K, Schierup M, Lindow B, Warren WC, Ray D, Green RE, Bruford MW, Zhan X, Dixon A, Li S, Li N, Huang Y, Derryberry EP, Bertelsen MF, Sheldon FH, Brumfield RT, Mello CV, Lovell PV, Wirthlin M, Schneider MP, Prosdocimi F, Samaniego JA, Vargas Velazquez AM, Alfaro-Nunez A, Campos PF, Petersen B, Sicheritz-Ponten T, Pas A, Bailey T, Scofield P, Bunce M, Lambert DM, Zhou Q, Perelman P, Driskell AC, Shapiro B, Xiong Z, Zeng Y, Liu S, Li Z, Liu B, Wu K, Xiao J, Yinqi X, Zheng Q, Zhang Y, Yang H, Wang J, Smeds L, Rheindt FE, Braun M, Fjeldsa J, Orlando L, Barker FK, Jonsson KA, Johnson W, Koepfli KP, O'Brien S, Haussler D, Ryder OA, Rahbek C, Willerslev E, Graves GR, Glenn TC, McCormack J, Burt D, Ellegren H, Alstrom P, Edwards SV, Stamatakis A, Mindell DP, Cracraft J, Braun EL, Warnow T, Jun W*, Gilbert MT* & Zhang G*. Whole-genome analyses resolve early branches in the tree of life of modern birds. Science, 2014, 346(6215):1320-1331. (Flagship paper in Special Issue of Avian phylogenomics Project)

8.  Zhang G*, Li C, Li Q, Li B, Larkin DM, Lee C, Storz JF, Antunes A, Greenwold MJ, Meredith RW, Odeen A, Cui J, Zhou Q, Xu L, Pan H, Wang Z, Jin L, Zhang P, Hu H, Yang W, Hu J, Xiao J, Yang Z, Liu Y, Xie Q, Yu H, Lian J, Wen P, Zhang F, Li H, Zeng Y, Xiong Z, Liu S, Zhou L, Huang Z, An N, Wang J, Zheng Q, Xiong Y, Wang G, Wang B, Wang J, Fan Y, da Fonseca RR, Alfaro-Nunez A, Schubert M, Orlando L, Mourier T, Howard JT, Ganapathy G, Pfenning A, Whitney O, Rivas MV, Hara E, Smith J, Farre M, Narayan J, Slavov G, Romanov MN, Borges R, Machado JP, Khan I, Springer MS, Gatesy J, Hoffmann FG, Opazo JC, Hastad O, Sawyer RH, Kim H, Kim KW, Kim HJ, Cho S, Li N, Huang Y, Bruford MW, Zhan X, Dixon A, Bertelsen MF, Derryberry E, Warren W, Wilson RK, Li S, Ray DA, Green RE, O'Brien SJ, Griffin D, Johnson WE, Haussler D, Ryder OA, Willerslev E, Graves GR, Alstrom P, Fjeldsa J, Mindell DP, Edwards SV, Braun EL, Rahbek C, Burt DW, Houde P, Zhang Y, Yang H, Wang J, Avian Genome C, Jarvis ED*, Gilbert MT* & Wang J*. Comparative genomics reveals insights into avian genome evolution and adaptation. Science, 2014, 346(6215):1311-1320. (Flagship paper in Special Issue of Avian phylogenomics Project)

9.  Li Q, Wang Z, Lian J, Schiott M, Jin L, Zhang P, Zhang Y, Nygaard S, Peng Z, Zhou Y, Deng Y, Zhang W, Boomsma JJ*, & Zhang G*. Caste-specific RNA editomes in the leaf-cutting ant Acromyrmex echinatior. Nat Commun, 2014, 5:4943.

10.  Poulsen M, Hu H, Li C, Chen Z, Xu L, Otani S, Nygaard S, Nobre T, Klaubauf S, Schindler PM, Hauser F, Pan H, Yang Z, Sonnenberg AS, de Beer ZW, Zhang Y, Wingfield MJ, Grimmelikhuijzen CJ, de Vries RP, Korb J, Aanen DK, Wang J*, Boomsma JJ*, & Zhang G*. Complementary symbiont contributions to plant decomposition in a fungus-farming termite. Proc Natl Acad Sci U S A, 2014, 111(40):14500-14505.