1) Sixue Liu#, Zuyu Yang#, Guanghao Li#, Chunyan Li, Yanting Luo, Qiang Gong, Xin Wu, Tao Li, Zhiqian Zhang, Baocai Xing, Xiaolan Xu*, Xuemei Lu*. Multi-omics Analysis in Primary Cell Culture Models Reveals the Genetic and Epigenetic Basis of Phenotypic Diversity within Tumors. Genomics, Proteomics and Bioinformatics.2018（已接收）
2) Furong Qi#, Airong Yang, Sadaf Ambreen, Xue Bai, Yali Hou*, Xuemei Lu*. Birth and death of Mx genes and the presence/absence of genes regulating Mx transcription are correlated with the diversity of anti-pathogenicity in vertebrate species. Molecular Genetics and Genomics. 2018（已接收）
3) Yanting Luo#, Jianlin He#, Xiguang Xu, Ming-an Sun, Xiaowei Wu, Xuemei Lu*, Hehuang Xie*. Integrative Single-cell Omics Analyses Reveal Epigenetic Heterogeneity in Mouse Embryonic Stem Cells. PLoS Computational Biology，2018;14(3):e1006034
4) Wen Ye, Shaoping Ling, Ran‐Yi Liu, Zhi‐Zhong Pan, Gaoyuan Wang, Shijuan Gao, Jiangxue Wu, Lihua Cao, Lili Dong, Yingchang Li, Yi Zhou, Wuying Du, Xiangqi Meng, Jinna Chen, Xinyuan Guan, Yulong He, Changchuan Pan, XF Steven Zheng, Xuemei Lu*, Shuai Chen*, Wenlin Huang*. Exome sequencing reveals the genetic landscape and frequent inactivation of PCDHB3 in Chinese rectal cancers. The Journal of Pathology, 2018;245(2):222-234
5) Chunyan Li#, Yali Hou#, Jin Xu#, Aiqun Zhang, Zhenzhen Liu, Furong Qi, Zuyu Yang, Ke Chen, Sixue Liu, Huanwei Huang, Qianfei Wang, Jiahong Dong, Chung-I Wu and Xuemei Lu*, A Direct Test of Selection in Cell Populations Using the Diversity in Gene Expression within Tumors, Molecular Biology and Evolution, 2017, 34(7):1730-1742
6) Jin Xu#, Xinxin Peng#, Yuxin Chen#, Yuezheng Zhang, Qin Ma, Liang Liang, Ava C. Carter, Xuemei Lu* and Chung-I Wu*, Free-living human cells reconfigure their chromosomes in the evolution 1 back to uni-cellularity, eLife, 2017, 6. pii: e28070
7) Zuyu Yang#, Mingming Jia#, Guojing Liu, Huaining Hao, Li Chen, Guanghao Li, Sixue Liu, Yawei Li, Chung-I Wu, Xuemei Lu*, Shengdian Wang*, Genomic sequencing identifies a few mutations driving the independent origin of primary liver tumors in a chronic hepatitis murine model, Plos one, 2017;12(11):e0187551
8) Chung-I Wu*, Hurng-Yi Wang, Shaoping Ling, Xuemei Lu*. The Ecology and Evolution of Cancer: The Ultra-Microevolutionary Process. Annual review of genetics. 2016, 50:347-369
9) Xu Shen, Xue Bai, Jin Xu, Min Zhou, Haipin Xu, Qinghua Nie, Xuemei Lu*, Xiquan Zhang*, Transcriptome sequencing reveals genetic mechanisms underlying the transition between the laying and brooding phases and gene expression changes associated with divergent reproductive phenotypes in chickens, Molecular Biology Reports, 2016, 43(9):977-989
10) Guojing Liu#, Rui Zhang#, Jin Xu, Chung-I Wu*, Xuemei Lu*, Functional conservation of both CDS- and 3’UTR- located miRNA binding sites between species, Molecular Biology and Evolution, 2015, 32(3):623-628
11) Shaoping Ling#, Zheng Hu#, Zuyu Yang#, Yang Fang#, Yawei Li, Pei Lin, Ke Chen, Lili Dong, Lihua Cao, Yong Tao, Lingtong Hao, Qingjian Chen, Qiang Gong, Dafei Wu, Wenjie Li, Wenming Zhao, Xiuyun Tian, Chunyi Hao*, Eric A. Hungate, Daniel V. T. Catenacci, Richard R. Hudson, Wen-Hsiung Li*, Xuemei Lu*, Chung-I Wu*, Extremely high genetic diversity in a single tumor points to prevalence of non-Darwinian cell evolution, Proc Natl Acad Sci U S A, 2015, 112(47):E6496-E6505
12) Chunyan Li#, Zhenzhen Liu#, Fang Yang#, Wensheng Liu, Di Wang, Encheng Dong, Yu Wang, Chung-I Wu, Xuemei Lu*, siRNAs with decreased off-target effect facilitate the identification of essential genes in cancer cells, Oncotarget, 2015, 6(25):21603-21613
13) Lei Zhao#, Ming-an Sun#, Zejuan Li#, Xue Bai, Miao Yu, Min Wang, Liji Liang, Xiaojian Shao, Stephen Arnovitz, Qianfei Wang, Chuan He, Xuemei Lu*, Jianjun Chen*, Hehuang Xie*, The dynamics of DNA methylation fidelity during mouse embryonic stem cell self-renewal and differentiation, Genome Research, 2014, 24(8):1296-1307
14) Xiaojian Shao#, Cuiyun Zhang, Ming-An Sun, Xuemei Lu*, Hehuang Xie*, Deciphering the Heterogeneity in DNA Methylation Patterns during Stem Cell Differentiation and Reprogramming, BMC Genomics, 2014, (18)978-987
15) Yanting Luo#, Xuemei Lu*, Hehuang Xie*, Dynamic Alu Methylation during Normal Development, Aging, and Tumorigenesis, Biomed Research International, 2014(784706)
16) Jue Ruan#, Lan Jiang#, Zechen Chong#, Qiang Gong#, Heng Li, Chunyan Li, Yong Tao, Caihong Zheng, Weiwei Zhai, David Turissini, Charles H Cannon, Xuemei Lu*, Chung-I Wu*, Pseudo-Sanger sequencing: massively parallel production of long and near error-free reads using NGS technology, BMC Genomics, 2013, 14(1):711-719
17) Yali Hou#, Yachun Wang#, Xuemei Lu#, Xu Zhang, Qian Zhao, Rory J. Todhunter*, Zhiwu Zhang*, Monitoring Hip and Elbow Dysplasia Achieved Modest Genetic Improvement of 74 Dog Breeds over 40 Years in USA, PLos One, 2013, 8(10) :e76390
18) Yong Tao#, Jue Ruan#, Shiou-Hwei Yeh#, Xuemei Lu#, Yu Wang#, Weiwei Zhai#, Jun Cai#, Shaoping Ling, Qiang Gong, Zechen Chong, Zhengzhong Qu, Qianqian Li, Jiang Liu, Jin Yang, Caihong Zheng, Changqing Zeng, Hurng-Yi Wang, Jing Zhang, Sheng-Han Wang, Lingtong Hao, Lili Dong, Wenjie Li, Min Sun, Wei Zou, Caixia Yu, Chaohua Li, Guojing Liu, Lan Jiang, Jin Xu, Huanwei Huang, Chunyan Li, Shuangli Mi, Bing Zhang, Baoxian Chen, Wenming Zhao, Songnian Hu, Shi-Mei Zhuang, Yang Shen, Suhua Shi, Christopher Brown, Kevin P.White, Ding-Shinn Chen*, Pei-Jer Chen, Chung-I Wu*, Rapid growth of a hepatocellular carcinoma and the driving mutations revealed by cell-population genetic analysis of whole-genome data, Proc Natl Acad Sci U S A, 2011, 108(29):12042-12047
19) Xuemei Lu, Chung-I Wu*, Sex, sex chromosomes and gene expression，BMC Biology, 2011, 9:30-32
20) Xuemei Lu#, Joshua A. Shapiro#, Chau-Ti Ting, Yan Li, Chunyan Li, Jin Xu, Huanwei Huang, Ya-Jen Cheng, Anthony J. Greenberg., Shou-Hsien Li, Mao-Lien Wu, Yang Shen, Chung-I Wu*, Genome-wide misexpression of X-linked versus autosomal genes associated with hybrid male sterility, Genome Research, 2010, 20(8):1097-1102
21) Yan Li#, Liqing Zhang#, Dexiang Zhang, Xiquan Zhang, Xuemei Lu*. Faster evolution of z-linked duplicate genes in chicken. Journal of genetics and genomics. 2010; 37(10): 695-702
